PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G003800.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 359aa    MW: 38903.3 Da    PI: 6.7939
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G003800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.72e-31321782128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..........leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                           p+G++F P+d+el+ e+L+  v  k+           ++ ++i+   di++++P++Lp  v+++  + +fF+k++k+y+tg+rk+r+  
  Sobic.006G003800.2.p  32 PAGVKFAPSDQELI-EHLESMVLVKEgggsrahpllSHFISTIEGGnDICYTHPENLP-GVAKDGLSKHFFHKTSKAYPTGTRKRRKiq 118
                           89************.99****999988888886664333234666669**********.555666799******************879 PP

                   NAM  78 ..........tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     + ++ W++tg++++v++ +g+++g+kk+Lv+++ ++   ekt+W+mh+y+l
  Sobic.006G003800.2.p 119 sergqrssedAGEAHWHKTGRTHAVIV-GGRQKGCKKILVLHNIKQGMREKTNWIMHQYHL 178
                           999999888777999************.99************9999999**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3325199IPR003441NAC domain
PROSITE profilePS5100530.20131199IPR003441NAC domain
PfamPF023651.5E-1332178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGDSSATNGS NDTEATASLA CPNCNLNLAG FPAGVKFAPS DQELIEHLES MVLVKEGGGS  60
RAHPLLSHFI STIEGGNDIC YTHPENLPGV AKDGLSKHFF HKTSKAYPTG TRKRRKIQSE  120
RGQRSSEDAG EAHWHKTGRT HAVIVGGRQK GCKKILVLHN IKQGMREKTN WIMHQYHLGM  180
SDADDEKDGE LVLSKVFYRC PDATMVEVEH NNEKVEVTSE ATSNILRVSG AAAVTAATVN  240
MVQQQQHRPQ RQAHGQDQCK FAPPNMFQEA GVGELVSGDQ GQVHDNNHHI PSQHLVQSVH  300
MEPDTTLSLQ VGVGDPVSGD QGQVHGNNHH IPSQNHVQSV DTEPVTTLSL ALSAGWCK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960907.14e-92PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-63NAC73_ARATH; NAC domain-containing protein 73
TrEMBLK3ZE962e-95K3ZE96_SETIT; Uncharacterized protein
STRINGSi024889m6e-95(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3774923
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-69NAC domain containing protein 75